Sequence::AlignStream< T > Member List

This is the complete list of members for Sequence::AlignStream< T >, including all inherited members.

AlignStream(const std::vector< T > &_data) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
AlignStream(std::vector< T > &&_data) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
AlignStream(const AlignStream< T > &a) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
AlignStream(AlignStream< T > &&a) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
AlignStream(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	inline
assign(const_iterator beg, const_iterator end)	Sequence::AlignStream< T >
assign(std::vector< T > &&_data)	Sequence::AlignStream< T >
begin() (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
begin() const (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
const_iterator typedef	Sequence::AlignStream< T >
const_reference typedef (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
Data(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
empty() const	Sequence::AlignStream< T >	inline
end() (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
end() const (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
Gapped(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
IsAlignment(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
iterator typedef	Sequence::AlignStream< T >
operator[](const size_type &i)	Sequence::AlignStream< T >	inline
operator[](const size_type &i) const	Sequence::AlignStream< T >	inline
print(std::ostream &s) const =0	Sequence::AlignStream< T >	pure virtual
read(std::istream &s)=0	Sequence::AlignStream< T >	pure virtual
reference typedef (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
RemoveGaps(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
RemoveTerminalGaps(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
size(void) const	Sequence::AlignStream< T >	inline
size_type typedef (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
Trim(std::vector< int >sites) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
TrimComplement(std::vector< int >sites) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
UnGappedLength(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
~ AlignStream(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	virtual