AlignStream(const std::vector< T > &_data) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
AlignStream(std::vector< T > &&_data) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
AlignStream(const AlignStream< T > &a) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
AlignStream(AlignStream< T > &&a) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
AlignStream(void) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | inline |
assign(const_iterator beg, const_iterator end) | Sequence::AlignStream< T > | |
assign(std::vector< T > &&_data) | Sequence::AlignStream< T > | |
begin() (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
begin() const (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
ClustalW(void) (defined in Sequence::ClustalW< T >) | Sequence::ClustalW< T > | inline |
ClustalW(const AlignStream< T > &a) (defined in Sequence::ClustalW< T >) | Sequence::ClustalW< T > | inline |
ClustalW(const ClustalW< T > &a) (defined in Sequence::ClustalW< T >) | Sequence::ClustalW< T > | inline |
ClustalW(const std::vector< T > &a) (defined in Sequence::ClustalW< T >) | Sequence::ClustalW< T > | inline |
ClustalW(AlignStream< T > &&a) (defined in Sequence::ClustalW< T >) | Sequence::ClustalW< T > | inline |
ClustalW(ClustalW< T > &&a) (defined in Sequence::ClustalW< T >) | Sequence::ClustalW< T > | inline |
ClustalW(std::vector< T > &&a) (defined in Sequence::ClustalW< T >) | Sequence::ClustalW< T > | inline |
const_iterator typedef | Sequence::AlignStream< T > | |
const_reference typedef (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
Data(void) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
empty() const | Sequence::AlignStream< T > | inline |
end() (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
end() const (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
Gapped(void) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
IsAlignment(void) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
iterator typedef | Sequence::AlignStream< T > | |
operator=(const AlignStream< T > &rhs) (defined in Sequence::ClustalW< T >) | Sequence::ClustalW< T > | inline |
operator[](const size_type &i) | Sequence::AlignStream< T > | inline |
operator[](const size_type &i) const | Sequence::AlignStream< T > | inline |
print(std::ostream &s) const | Sequence::ClustalW< T > | virtual |
read(std::istream &s) | Sequence::ClustalW< T > | virtual |
reference typedef (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
RemoveGaps(void) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
RemoveTerminalGaps(void) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
size(void) const | Sequence::AlignStream< T > | inline |
size_type typedef (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
Trim(std::vector< int >sites) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
TrimComplement(std::vector< int >sites) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
UnGappedLength(void) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | |
~ AlignStream(void) (defined in Sequence::AlignStream< T >) | Sequence::AlignStream< T > | virtual |
~ClustalW(void) (defined in Sequence::ClustalW< T >) | Sequence::ClustalW< T > | inline |