Index

A

allele_counts() (in module libsequence) AlleleCountMatrix (class in libsequence) AlleleCounts (class in libsequence)

as_list() (libsequence.ColView method) (libsequence.ConstColView method) (libsequence.ConstRowView method) (libsequence.RowView method)

C

ColView (class in libsequence) ConstColView (class in libsequence) ConstRowView (class in libsequence)

core_count (libsequence.nSLresults attribute) count_alleles() (libsequence.VariantMatrix method) counts (libsequence.AlleleCountMatrix attribute) (libsequence.StateCounts attribute)

D

data (libsequence.VariantMatrix attribute)

F

faywuh() (in module libsequence)

from_TreeSequence() (libsequence.VariantMatrix method) from_tskit() (libsequence.AlleleCountMatrix method)

G

garud_statistics() (in module libsequence)

GarudStats (class in libsequence)

H

H1 (libsequence.GarudStats attribute) H12 (libsequence.GarudStats attribute)

H2H1 (libsequence.GarudStats attribute) haplotype_diversity() (in module libsequence) hprime() (in module libsequence)

I

ihs (libsequence.nSLresults attribute)

is_different_matrix() (in module libsequence)

L

label_haplotypes() (in module libsequence)

N

n (libsequence.StateCounts attribute) ncol (libsequence.AlleleCountMatrix attribute) nmissing (libsequence.AlleleCounts attribute) non_reference_allele_counts() (in module libsequence) nrow (libsequence.AlleleCountMatrix attribute) nsam (libsequence.AlleleCountMatrix attribute) (libsequence.VariantMatrix attribute)

nsites (libsequence.VariantMatrix attribute) nsl (libsequence.nSLresults attribute) nsl() (in module libsequence) nSLresults (class in libsequence) nslx() (in module libsequence) nstates (libsequence.AlleleCounts attribute) number_of_haplotypes() (in module libsequence)

P

positions (libsequence.VariantMatrix attribute)

R

refstate (libsequence.StateCounts attribute)

row() (libsequence.AlleleCountMatrix method) RowView (class in libsequence)

S

sample() (libsequence.VariantMatrix method) site() (libsequence.VariantMatrix method)

slice() (libsequence.VariantMatrix method) StateCounts (class in libsequence)

T

tajd() (in module libsequence) thetapi() (in module libsequence)

thetaw() (in module libsequence) two_locus_haplotype_counts() (in module libsequence)

V

VariantMatrix (class in libsequence)

W

window() (libsequence.VariantMatrix method)