Literature cited¶
References
[1] | F Depaulis and M Veuille. Neutrality tests based on the distribution of haplotypes under an infinite-site model. Mol. Biol. Evol., 15(12):1788–1790, December 1998. URL: https://www.ncbi.nlm.nih.gov/pubmed/9917213. |
[2] | J C Fay and C I Wu. Hitchhiking under positive darwinian selection. Genetics, 155(3):1405–1413, July 2000. URL: https://www.ncbi.nlm.nih.gov/pubmed/10880498. |
[3] | Anna Ferrer-Admetlla, Mason Liang, Thorfinn Korneliussen, and Rasmus Nielsen. On detecting incomplete soft or hard selective sweeps using haplotype structure. Mol. Biol. Evol., 31(5):1275–1291, May 2014. URL: http://dx.doi.org/10.1093/molbev/msu077, doi:10.1093/molbev/msu077. |
[4] | Nandita R Garud, Philipp W Messer, Erkan O Buzbas, and Dmitri A Petrov. Recent selective sweeps in north american drosophila melanogaster show signatures of soft sweeps. PLoS Genet., 11(2):e1005004, February 2015. URL: http://dx.doi.org/10.1371/journal.pgen.1005004, doi:10.1371/journal.pgen.1005004. |
[5] | Jerome Kelleher, Alison M Etheridge, and Gilean McVean. Efficient coalescent simulation and genealogical analysis for large sample sizes. PLoS Comput. Biol., 12(5):e1004842, May 2016. URL: http://dx.doi.org/10.1371/journal.pcbi.1004842, doi:10.1371/journal.pcbi.1004842. |
[6] | Jerome Kelleher, Kevin R Thornton, Jaime Ashander, and Peter L Ralph. Efficient pedigree recording for fast population genetics simulation. PLoS Comput. Biol., 14(11):e1006581, November 2018. URL: http://dx.doi.org/10.1371/journal.pcbi.1006581, doi:10.1371/journal.pcbi.1006581. |
[7] | F Tajima. Evolutionary relationship of DNA sequences in finite populations. Genetics, 105(2):437–460, October 1983. URL: https://www.ncbi.nlm.nih.gov/pubmed/6628982. |
[8] | F Tajima. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123(3):585–595, November 1989. URL: https://www.ncbi.nlm.nih.gov/pubmed/2513255. |
[9] | Kevin Thornton. Libsequence: a c++ class library for evolutionary genetic analysis. Bioinformatics, 19(17):2325–2327, November 2003. URL: https://www.ncbi.nlm.nih.gov/pubmed/14630667, doi:10.1093/bioinformatics/btg316. |
[10] | G A Watterson. On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol., 7(2):256–276, April 1975. URL: https://www.ncbi.nlm.nih.gov/pubmed/1145509, doi:10.1016/0040-5809(75)90020-9. |
[11] | Kai Zeng, Yun-Xin Fu, Suhua Shi, and Chung-I Wu. Statistical tests for detecting positive selection by utilizing high-frequency variants. Genetics, 174(3):1431–1439, November 2006. URL: http://dx.doi.org/10.1534/genetics.106.061432, doi:10.1534/genetics.106.061432. |