Unit tests for fxns in namespace Sequence::Alignment.
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#include <Sequence/Fasta.hpp>
#include <Sequence/Alignment.hpp>
#include <boost/test/unit_test.hpp>
#include <vector>
#include <fstream>
#include <iterator>
#include <algorithm>
#include <unistd.h>
Go to the source code of this file.
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| BOOST_AUTO_TEST_CASE (IsAlignmentFasta) |
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| BOOST_AUTO_TEST_CASE (IsAlignmentString) |
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| BOOST_AUTO_TEST_CASE (GetDataFasta) |
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| BOOST_AUTO_TEST_CASE (GetDataFastaStream) |
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| BOOST_AUTO_TEST_CASE (GetDataString) |
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| BOOST_AUTO_TEST_CASE (GetDataStringStream) |
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| BOOST_AUTO_TEST_CASE (ReadNFasta) |
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| BOOST_AUTO_TEST_CASE (ReadNString) |
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| BOOST_AUTO_TEST_CASE (GappedFasta) |
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| BOOST_AUTO_TEST_CASE (GappedString) |
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| BOOST_AUTO_TEST_CASE (UnGappedLengthFasta) |
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| BOOST_AUTO_TEST_CASE (UnGappedLengthString) |
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| BOOST_AUTO_TEST_CASE (RemoveGapsFasta) |
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| BOOST_AUTO_TEST_CASE (RemoveGapsString) |
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| BOOST_AUTO_TEST_CASE (RemoveTerminalGapsFasta) |
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| BOOST_AUTO_TEST_CASE (RemoveTerminalGapString) |
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| BOOST_AUTO_TEST_CASE (TrimFasta) |
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| BOOST_AUTO_TEST_CASE (TrimString) |
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| BOOST_AUTO_TEST_CASE (TrimComplementFasta) |
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| BOOST_AUTO_TEST_CASE (TrimComplementString) |
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| BOOST_AUTO_TEST_CASE (TrimComplementSameResults) |
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Unit tests for fxns in namespace Sequence::Alignment.
This ns is implmented in terms of T, intended to be in thet Sequence::Seq hierarchy.
Specializations for std::string also exist.
This module tests both
Definition in file AlignmentTest.cc.