AlignmentTest.cc File Reference

Unit tests for fxns in namespace Sequence::Alignment. More...

#include <Sequence/Fasta.hpp>
#include <Sequence/Alignment.hpp>
#include <boost/test/unit_test.hpp>
#include <vector>
#include <fstream>
#include <iterator>
#include <algorithm>
#include <unistd.h>

Go to the source code of this file.

Functions
	BOOST_AUTO_TEST_CASE (IsAlignmentFasta)
	BOOST_AUTO_TEST_CASE (IsAlignmentString)
	BOOST_AUTO_TEST_CASE (GetDataFasta)
	BOOST_AUTO_TEST_CASE (GetDataFastaStream)
	BOOST_AUTO_TEST_CASE (GetDataString)
	BOOST_AUTO_TEST_CASE (GetDataStringStream)
	BOOST_AUTO_TEST_CASE (ReadNFasta)
	BOOST_AUTO_TEST_CASE (ReadNString)
	BOOST_AUTO_TEST_CASE (GappedFasta)
	BOOST_AUTO_TEST_CASE (GappedString)
	BOOST_AUTO_TEST_CASE (UnGappedLengthFasta)
	BOOST_AUTO_TEST_CASE (UnGappedLengthString)
	BOOST_AUTO_TEST_CASE (RemoveGapsFasta)
	BOOST_AUTO_TEST_CASE (RemoveGapsString)
	BOOST_AUTO_TEST_CASE (RemoveTerminalGapsFasta)
	BOOST_AUTO_TEST_CASE (RemoveTerminalGapString)
	BOOST_AUTO_TEST_CASE (TrimFasta)
	BOOST_AUTO_TEST_CASE (TrimString)
	BOOST_AUTO_TEST_CASE (TrimComplementFasta)
	BOOST_AUTO_TEST_CASE (TrimComplementString)
	BOOST_AUTO_TEST_CASE (TrimComplementSameResults)

Detailed Description

Unit tests for fxns in namespace Sequence::Alignment.

This ns is implmented in terms of T, intended to be in thet Sequence::Seq hierarchy.

Specializations for std::string also exist.

This module tests both

Definition in file AlignmentTest.cc.