1 #ifndef __SEQUENCE_COALESCENT_DEMOGRAPHICMODELS_HPP__ 2 #define __SEQUENCE_COALESCENT_DEMOGRAPHICMODELS_HPP__ 9 template<
typename uniform_generator,
10 typename uniform01_generator,
11 typename exponential_generator>
12 arg bottleneck( uniform_generator & uni,
13 uniform01_generator & uni01,
14 exponential_generator & expo,
15 const std::vector<chromosome> & initialized_sample,
16 const marginal & initialized_marginal,
20 const double & rho = 0.,
21 const bool & exponential_recovery =
false,
22 const double & recovered_size = 1. );
24 template<
typename uniform_generator,
25 typename uniform01_generator,
26 typename exponential_generator>
27 arg bottleneck(
const uniform_generator & uni,
28 const uniform01_generator & uni01,
29 const exponential_generator & expo,
30 const std::vector<chromosome> & initialized_sample,
31 const marginal & initialized_marginal,
35 const double & rho = 0.,
36 const bool & exponential_recovery =
false,
37 const double & recovered_size = 1. );
39 template<
typename uniform_generator,
40 typename uniform01_generator,
41 typename exponential_generator>
42 arg exponential_change( uniform_generator & uni,
43 uniform01_generator & uni01,
44 exponential_generator & expo,
45 const std::vector<chromosome> & initialized_sample,
46 const marginal & initialized_marginal,
48 const double & t_begin,
50 const double & rho = 0.,
51 const double & size_at_end = -1);
53 template<
typename uniform_generator,
54 typename uniform01_generator,
55 typename exponential_generator>
56 arg exponential_change(
const uniform_generator & uni,
57 const uniform01_generator & uni01,
58 const exponential_generator & expo,
59 const std::vector<chromosome> & initialized_sample,
60 const marginal & initialized_marginal,
62 const double & t_begin,
64 const double & rho = 0.,
65 const double & size_at_end = -1);
67 template<
typename uniform_generator,
68 typename uniform01_generator,
69 typename exponential_generator>
70 arg snm( uniform_generator & uni,
71 uniform01_generator & uni01,
72 exponential_generator & expo,
73 const std::vector<chromosome> & initialized_sample,
74 const marginal & initialized_marginal,
77 template<
typename uniform_generator,
78 typename uniform01_generator,
79 typename exponential_generator>
80 arg snm(
const uniform_generator & uni,
81 const uniform01_generator & uni01,
82 const exponential_generator & expo,
83 const std::vector<chromosome> & initialized_sample,
84 const marginal & initialized_marginal,
89 #include <Sequence/Coalescent/bits/DemographicModels.tcc> std::list< marginal > arg
Ancestral Recombination Graph.
The namespace in which this library resides.
declaration of types for coalescent simulation