libsequence  1.9.5
Garud.hpp
1 #ifndef __SEQUENCE_GARUD_HPP__
2 #define __SEQUENCE_GARUD_HPP__
3 
4 #include <Sequence/SimData.hpp>
5 #include <Sequence/summstats/garud.hpp>
6 
7 namespace Sequence
8 {
9  /*
10  Garud et al. DOI: 10.1371/journal.pgen.1005004
11  Messer & Petrov DOI: 10.1016/j.tree.2013.08.003
12  Note that H1 = 1 - haplotype homozygosity, e.g. Depaulis and Veuille's "H"
13  \ingroup popgenanalysis
14  \return An object of type Sequence::GarudStats
15  */
16  GarudStats H1H12(const SimData & d)__attribute__ ((deprecated));
17 }
18 
19 #endif
Sequence::GarudStats
GarudStats
Definition: Garud.cc:22
Sequence
The namespace in which this library resides.
garud.hpp
H1, H12, and H2/H1 stats.
Sequence::__attribute__
class __attribute__((deprecated)) FST
Functor to count the number of states, excluding gaps and missing data, in a range of characters...
Definition: FST.hpp:41
SimData.hpp
Declaration of Sequence::SimData, a class representing polymorphism data from coalescent simulations ...