libsequence  1.9.5
PathwayHelper.hpp
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1 /*
2 
3 Copyright (C) 2003-2009 Kevin Thornton, krthornt[]@[]uci.edu
4 
5 Remove the brackets to email me.
6 
7 This file is part of libsequence.
8 
9 libsequence is free software: you can redistribute it and/or modify
10 it under the terms of the GNU General Public License as published by
11 the Free Software Foundation, either version 3 of the License, or
12 (at your option) any later version.
13 
14 libsequence is distributed in the hope that it will be useful,
15 but WITHOUT ANY WARRANTY; without even the implied warranty of
16 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 GNU General Public License for more details.
18 
19 You should have received a copy of the GNU General Public License
20 long with libsequence. If not, see <http://www.gnu.org/licenses/>.
21 
22 */
23 
24 #ifndef __PATHWAYHELPER_H__
25 #define __PATHWAYHELPER_H__
26 
35 #include <string>
36 #include <array>
37 namespace Sequence
38 {
39  using Inter2_t = std::array<std::string,2>;
40  using Inter3_t = std::array<std::string,9>;
41  Inter2_t Intermediates2(const std::string &codon1, const std::string &codon2);
42  Inter3_t Intermediates3(const std::string &codon1, const std::string &codon2);
43 }
44 #endif
45 
The namespace in which this library resides.
Inter2_t Intermediates2(const std::string &codon1, const std::string &codon2)
Calculate the intermediate codons between a pair of codons diverged at 2 positions.
Inter3_t Intermediates3(const std::string &codon1, const std::string &codon2)
Calculate the intermediate codons between a pair of codons diverged at 3 positions.