50 int poly (
int *subslist,
const int & ss,
51 const int & subsize,
const int & subss,
int *seq)
const;
52 int nextsample (
int *subslist,
const int & subsize,
const int & nsam,
int seq)
const;
54 void WallStats(
void)
const;
57 virtual ~ PolySIM(
void);
59 double ThetaPi (
void)
const;
60 double ThetaW (
void)
const;
61 double ThetaH (
void)
const;
62 double ThetaL (
void)
const;
65 unsigned NumMutations (
void)
const;
66 unsigned NumSingletons (
void)
const;
67 unsigned NumExternalMutations (
void)
const;
69 double TajimasD (
void)
const;
70 double Hprime (
const bool & likeThorntonAndolfatto =
false)
const;
71 double Dnominator (
void)
const;
72 double FuLiD (
void)
const;
73 double FuLiF (
void)
const;
74 double FuLiDStar (
void)
const;
75 double FuLiFStar (
void)
const;
76 double WallsB(
void)
const;
77 unsigned WallsBprime(
void)
const;
78 double WallsQ(
void)
const;
80 int HudsonsHaplotypeTest (
const int & subsize,
const int & subss)
const;
83 unsigned Minrec (
void)
const;
The namespace in which this library resides.
declaration of Sequence::PolySNP, a class to analyze SNP data
class __attribute__((deprecated)) FST
Functor to count the number of states, excluding gaps and missing data, in a range of characters...
Data from coalescent simulations.