- a -

• abv : Sequence::coalsim::node

- b -

• beg : Sequence::coalsim::marginal

- c -

• chisquareds : Sequence::HKAresults
• col_end : Sequence::internal::col_view_< T >
• core_count : Sequence::nSLiHS
• counts : Sequence::StateCounts

- d -

• D : Sequence::HKAdata , Sequence::PairwiseLDstats
• data : Sequence::col_view_iterator< POINTER > , Sequence::internal::col_view_< T > , Sequence::internal::row_view_< T > , Sequence::VariantMatrix
• Dprime : Sequence::PairwiseLDstats

- f -

• fhat : Sequence::HKAresults

- i -

• i : Sequence::PairwiseLDstats
• ihs : Sequence::nSLiHS

- j -

• j : Sequence::PairwiseLDstats

- m -

• mask : Sequence::VariantMatrix
• max_allele : Sequence::VariantMatrix
• max_allele_idx : Sequence::StateCounts

- n -

• n : Sequence::StateCounts
• nA : Sequence::HKAdata
• nmissing : Sequence::AlleleCounts
• nnodes : Sequence::coalsim::marginal
• nsam : Sequence::coalsim::marginal , Sequence::VariantMatrix
• nsegs : Sequence::coalsim::chromosome
• nsites : Sequence::VariantMatrix
• nsl : Sequence::nSLiHS
• nstates : Sequence::AlleleCounts

- o -

• offset : Sequence::col_view_iterator< POINTER >

- p -

• pop : Sequence::coalsim::chromosome
• positions : Sequence::VariantMatrix

- r -

• refstate : Sequence::StateCounts
• row_size : Sequence::internal::row_view_< T >
• rsq : Sequence::PairwiseLDstats

- s -

• SA : Sequence::HKAdata
• segs : Sequence::coalsim::chromosome
• skipped : Sequence::PairwiseLDstats
• start : Sequence::col_view_iterator< POINTER >
• stride : Sequence::col_view_iterator< POINTER > , Sequence::internal::col_view_< T >

- t -

• That : Sequence::HKAresults
• thetas : Sequence::HKAresults
• time : Sequence::coalsim::node
• tree : Sequence::coalsim::marginal

- x -

• xsq : Sequence::HKAresults
• xsqA : Sequence::HKAresults
• xsqB : Sequence::HKAresults