Sequence::HKAdata Struct Reference

Data from a single locus for an HKA test. More...

#include <Sequence/HKA.hpp>

Public Member Functions
	HKAdata ()
	HKAdata (const HKAdata &d)
	HKAdata (unsigned sa, unsigned sb, double d, unsigned na, unsigned nb)

Public Attributes
const unsigned	SA
const unsigned	SB
const double	D
const unsigned	nA
const unsigned	nB

Detailed Description

Data from a single locus for an HKA test.

Data from a single locus for an HKA test

Definition at line 39 of file HKA.hpp.

Constructor & Destructor Documentation

HKAdata() [1/3]

Sequence::HKAdata::HKAdata

(

)

default constructor

Definition at line 52 of file HKA.cc.

HKAdata() [2/3]

Sequence::HKAdata::HKAdata

(

const HKAdata &

d

)

copy constructor

Definition at line 59 of file HKA.cc.

HKAdata() [3/3]

Sequence::HKAdata::HKAdata	(	unsigned	sa,
		unsigned	sb,
		double	d,
		unsigned	na,
		unsigned	nb
	)

Parameters

sa	Num. polymorphic sites in species a
sb	Num. polymorphic sites in species b
d	Divergence between species a and b (per locus)
na	sample size for species a
nb	sample size for species b

Definition at line 66 of file HKA.cc.

Member Data Documentation

D

const double Sequence::HKAdata::D

D is a measure of divergence between species A and B, i.e. mean pairwise differences

Definition at line 50 of file HKA.hpp.

nA

const unsigned Sequence::HKAdata::nA

The sample sizes in species A and B

Definition at line 54 of file HKA.hpp.

SA

const unsigned Sequence::HKAdata::SA

SA is the number of polymorphic sites in species A, SB is the same quantity for species B

Definition at line 45 of file HKA.hpp.

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The documentation for this struct was generated from the following files:

• HKA.hpp
• HKA.cc