Classes related to the calculation of Ka and Ks

Modules
	Classes and functions relating to pathway weighting for Ka/Ks

Classes
class	Sequence::Comeron95
	Ka and Ks by Comeron's (1995) method. More...
class	Sequence::RedundancyCom95
	Calculate redundancy of a genetic code using Comeron's counting scheme. More...
class	Sequence::SingleSub
	Deal with codons differing at 1 position. More...
class	Sequence::Sites
	Calculate length statistics for divergence calculations. More...
class	Sequence::ThreeSubs
	Deal with codons differing at all 3 positions. More...
class	Sequence::TwoSubs
	Deal with codons differing at 2 positions. More...

Detailed Description