libsequence  1.9.5
Classes related to the calculation of Ka and Ks

Modules

 Classes and functions relating to pathway weighting for Ka/Ks
 

Classes

class  Sequence::Comeron95
 Ka and Ks by Comeron's (1995) method. More...
 
class  Sequence::RedundancyCom95
 Calculate redundancy of a genetic code using Comeron's counting scheme. More...
 
class  Sequence::SingleSub
 Deal with codons differing at 1 position. More...
 
class  Sequence::Sites
 Calculate length statistics for divergence calculations. More...
 
class  Sequence::ThreeSubs
 Deal with codons differing at all 3 positions. More...
 
class  Sequence::TwoSubs
 Deal with codons differing at 2 positions. More...
 

Detailed Description