libsequence  1.9.5
Classes and functions relating to pathway weighting for Ka/Ks

Classes

class  Sequence::GranthamWeights2
 Weights paths by Grantham's distances for codons differing at 2 sites. More...
 
class  Sequence::GranthamWeights3
 Weights paths by Grantham's distances for codons differing at 3 sites. More...
 
class  Sequence::Unweighted2
 weights all pathways equally More...
 
class  Sequence::Unweighted3
 weights all pathways equally More...
 
class  Sequence::WeightingScheme2
 abstract interface to weighting schemes when codons differ at 2 positions More...
 
class  Sequence::WeightingScheme3
 abstract interface to weighting schemes when codons differ at 3 positions More...
 

Detailed Description