Tutorial/overview

The citation for the library is [8]

Creation and manipulation of a VariantMatrix

TBW

Calculation of summary statistics from a VariantMatrix

In libsequence, variation data are represented as a Sequence::VariantMatrix. The library provides functions for many standard analyses based on input data in this format. The following headers are relevant:

1. Sequence/summstats.hpp

Clicking on the above headers will reveal the existence of other headers. The intent is that you may only wish to bring some names into scope. For example, if you implement a new analysis where mean pairwise differences are needed, you many include Sequence/summstats/thetapi.hpp instead of every single summary statistic function provided by the library.

TBW