4 #include <Sequence/VariantMatrix.hpp> 5 #include <Sequence/VariantMatrixViews.hpp> 6 #include <Sequence/variant_matrix/msformat.hpp> 10 main(
int argc,
char** argv)
13 for (std::size_t i = 0; i < vm.nsites; ++i)
16 if (!std::isnan(n.nsl))
18 std::cout << vm.positions[i] <<
' ' << n.nsl <<
' ' 19 << n.ihs <<
' ' << n.core_count <<
'\n';
VariantMatrix from_msformat(streamtype &input_stream)
Create VariantMatrix from "ms"-like input format.
nSLiHS nsl(const VariantMatrix &m, const std::size_t core, const std::int8_t refstate)
nSL and iHS statistics