Clustalw.hpp

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/*

Copyright (C) 2003-2009 Kevin Thornton, krthornt[]@[]uci.edu

Remove the brackets to email me.

This file is part of libsequence.

libsequence is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

libsequence is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
long with libsequence.  If not, see <http://www.gnu.org/licenses/>.

*/

#include <Sequence/AlignStream.hpp>

#ifndef __CLUSTALW_HPP__
#define __CLUSTALW_HPP__

namespace Sequence
{
  template < typename T >
  class ClustalW:public AlignStream < T >
  {
  private:
    std::istream & ReadThroughLine (std::istream &);
  public:
    ClustalW (void):AlignStream<T>()
    {}
    ClustalW(const AlignStream<T> & a) : AlignStream<T>(a)
    {
    }
    ClustalW(const ClustalW<T> & a) : AlignStream<T>(a)
    {
    }
    ClustalW(const std::vector<T> & a) : AlignStream<T>(a)
    {
    }
    ClustalW( AlignStream<T> && a) : AlignStream<T>(std::move(a))
    {
    }
    ClustalW( ClustalW<T> && a) : AlignStream<T>(std::move(a))
    {
    }
    ClustalW( std::vector<T> && a) : AlignStream<T>(std::move(a))
    {
    }
    ~ClustalW(void)
    {}
    std::istream & read (std::istream & s);
    std::ostream & print(std::ostream &s) const;
    ClustalW<T> & operator=( const AlignStream<T> & rhs)
    {
      this->assign(rhs.begin(),rhs.end());
      return *this;
    }
  };
}
#include <Sequence/bits/Clustalw.tcc>
#endif