Grantham.hpp

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/*

Copyright (C) 2003-2009 Kevin Thornton, krthornt[]@[]uci.edu

Remove the brackets to email me.

This file is part of libsequence.

libsequence is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

libsequence is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
long with libsequence.  If not, see <http://www.gnu.org/licenses/>.

*/

#ifndef GRANTHAM_H
#define GRANTHAM_H

#include <limits>

namespace Sequence
  {
  class Grantham
    {
    private:
      double D[60][60];
      const double stopweight;
    public:
      Grantham(const double stop = std::numeric_limits<double>::max());
      double operator()(char aa1, char aa2) const;
    };
}
#endif