39 template<
class __DataType>
40 void fillIt(
const std::vector < __DataType >&alignment,
41 bool strictInfSites = 0,
42 bool ignoregaps = 1,
bool skipMissing=
false,
43 unsigned freqfilter=0);
46 template<
typename __DataType>
47 PolySites (
const std::vector < __DataType >&alignment,
48 bool strictInfSites = 0,
50 bool skipMissing=
false,
51 bool skipAdjSNP=
false,
52 unsigned freqfilter=0);
54 PolySites ( std::vector < double > List, std::vector < std::string > stringList);
55 PolySites (PolyTable::const_site_iterator beg,
56 PolyTable::const_site_iterator end);
62 std::istream & read(std::istream &s) ;
63 std::ostream &
print(std::ostream &stream)
const;
66 #include <Sequence/bits/PolySites.tcc> The base class for polymorphism tables.
Polymorphism tables for sequence data.
Sequence::PolyTable, a virtual base class for polymorphism tables.
std::ostream & print(std::ostream &stream) const
output a tab-delimited array of positions and character states
The namespace in which this library resides.