24 #ifndef __SEQUENCE_SNN_HPP__ 25 #define __SEQUENCE_SNN_HPP__ 39 const std::vector< std::vector<double> > & dkj,
40 const unsigned config[],
44 template<
typename shuffler >
45 std::pair<double,double>
46 Snn_test(
const PolyTable & snpTable,
47 const unsigned config[],
52 template< typename shuffler >
53 std::vector<
std::vector<
double> >
54 Snn_test_pairwise(const PolyTable & snpTable,
55 const
unsigned config[],
61 #include <Sequence/bits/Snn.tcc> double Snn_statistic(const unsigned individuals[], const std::vector< std::vector< double > > &dkj, const unsigned config[], const size_t &npop, const unsigned &nsam) __attribute__((deprecated))
Sequence::PolyTable, a virtual base class for polymorphism tables.
The namespace in which this library resides.
class __attribute__((deprecated)) FST
Functor to count the number of states, excluding gaps and missing data, in a range of characters...
delcaration of routines for comparing DNA sequences This file declares a set of functions useful for ...