Comparisons.hpp File Reference

delcaration of routines for comparing DNA sequences This file declares a set of functions useful for comparing two bits of sequence data–sequences, nucleotides, etc. More...

#include <string>
#include <algorithm>
#include <type_traits>
#include <Sequence/SeqEnums.hpp>

Go to the source code of this file.

Namespaces
	Sequence
	The namespace in which this library resides.

Functions
Mutations	Sequence::TsTv (const char &i, const char &j)
Mutations	Sequence::TsTv (const int &i, const int &j)
bool	Sequence::Different (const std::string &seq1, const std::string &seq2, const bool &skip_missing=true, const bool &nucleic_acid=true)
int	Sequence::NumDiffs (const std::string &seq1, const std::string &seq2, const bool &skip_missing=true, const bool &nucleic_acid=true)
bool	Sequence::Gapped (const std::string &s)
template<typename Iterator >
bool	Sequence::Gapped (Iterator beg, Iterator end, const char &gapchar='-')
bool	Sequence::NotAGap (const char &c)

Detailed Description

delcaration of routines for comparing DNA sequences This file declares a set of functions useful for comparing two bits of sequence data–sequences, nucleotides, etc.

Routines to compare bases, sequences, etc. Declares Sequence::TsTv,Sequence::NumDiffs,Sequence::Gapped, Sequence::NotAGap

Definition in file Comparisons.hpp.