TreeOperations.hpp File Reference

#include <Sequence/Coalescent/SimTypes.hpp>
#include <vector>
#include <memory>

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Namespaces
	Sequence
	The namespace in which this library resides.
	Sequence::coalsim
	Routines for coalescent simulation.

Functions
double	Sequence::coalsim::total_time (const marginal::const_iterator beg, const int &nsam)
	Calculate total time on a marginal tree. More...
int	Sequence::coalsim::pick_branch (marginal::const_iterator beg, const int &nsam, const double &rtime)
	pick a random branch of a marginal tree More...
std::vector< int >	Sequence::coalsim::get_all_descendants (marginal::const_iterator beg, const int &nsam, const int &branch)
	Find all the descendants of a branch on a marginal tree. More...
bool	Sequence::coalsim::is_descendant (marginal::const_iterator beg, const int &ind, const int &branch)
	Ask if a tip of a tree is a descendant of a particular branch. More...
double	Sequence::coalsim::total_time_on_arg (const Sequence::coalsim::arg &sample_history, const int &total_number_of_sites)
	Returns the total time on an ancestral recombination graph. More...
void	Sequence::coalsim::minimize_arg (arg *sample_history)

Detailed Description

Things you may want to do with marginal trees in a coalescent simulations

Definition in file TreeOperations.hpp.