WeightingSchemes.hpp

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/*

Copyright (C) 2003-2009 Kevin Thornton, krthornt[]@[]uci.edu

Remove the brackets to email me.

This file is part of libsequence.

libsequence is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

libsequence is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
long with libsequence.  If not, see <http://www.gnu.org/licenses/>.

*/

#ifndef __WEIGHTING_SCHEMES_H__
#define __WEIGHTING_SCHEMES_H__

#include <string>
#include <array>
#include <Sequence/SeqEnums.hpp>
namespace Sequence
  {
    struct WeightingScheme2
    {
      using weights2_t = std::array<double,2>;
      explicit WeightingScheme2(void)
      {}
      virtual ~WeightingScheme2(void)
      {}
      virtual weights2_t operator()(const std::string &codon1, const std::string &codon2,Sequence::GeneticCodes genetic_code) const =0;
    };

  struct WeightingScheme3
    {
      using weights3_t = std::array<double,6>;
      explicit WeightingScheme3(void)
      {}
      virtual ~WeightingScheme3(void)
      {}
      virtual weights3_t operator()(const std::string &codon1, const std::string &codon2,Sequence::GeneticCodes genetic_code) const =0;
    };
}
#endif