fastq.hpp

Go to the documentation of this file.

#ifndef __SEQUENCE_FASTQ_HPP__
#define __SEQUENCE_FASTQ_HPP__

#include <Sequence/Seq.hpp>

namespace Sequence
  {
  class fastq : public Seq
    {
    public:
      std::string quality;
    private:
      bool repeat_name;
    public:
      using Seq::Seq;
      fastq(void);
      fastq (const std::string &name, const std::string &seq,
             const std::string & qual);
      fastq (std::string && name, std::string && seq,
             std::string && qual);
      fastq (const Seq & s);
      fastq (const fastq & s) = default;
      fastq ( fastq && s) = default;
      fastq ( Seq && s);
      fastq & operator=(const fastq & ) = default;
      fastq & operator=( fastq && ) = default;
      ~fastq() {}

      void repname(const bool &);
      std::istream & read(std::istream &s);
      std::ostream & print(std::ostream& s) const;
    };
}

#endif