shortestPath.hpp File Reference

Routines to find the shortest distance between any 2 codons, using Grantham's distance. Declares the class Sequence::shortestPath, and the functions Sequence::mutsShortestPath and Sequence::diffType. More...

#include <vector>
#include <utility>
#include <memory>
#include <tuple>
#include <cstdint>
#include <Sequence/SeqEnums.hpp>

Go to the source code of this file.

Classes
class	Sequence::shortestPath
	Calculate shortest path between 2 codons. More...

Namespaces
	Sequence
	The namespace in which this library resides.

Functions
std::pair< unsigned, unsigned >	Sequence::mutsShortestPath (const std::string &codon1, const std::string &codon2, const Sequence::GeneticCodes &code=GeneticCodes::UNIVERSAL)
std::pair< unsigned, shortestPath::pathType >	Sequence::diffType (const std::string &codon1, const std::string &codon2, const Sequence::GeneticCodes &code=GeneticCodes::UNIVERSAL)
std::tuple< shortestPath::pathType, shortestPath::pathType, shortestPath::pathType >	Sequence::diffTypeMulti (const std::string &codon1, const std::string &codon2, const Sequence::GeneticCodes &code=GeneticCodes::UNIVERSAL)

Detailed Description

Routines to find the shortest distance between any 2 codons, using Grantham's distance. Declares the class Sequence::shortestPath, and the functions Sequence::mutsShortestPath and Sequence::diffType.

Definition in file shortestPath.hpp.