57 stateCounter::stateCounter(
char gapchar):a(0),g(0),c(0),
58 t(0),zero(0),one(0),gap(0),n(0),ndna(false),_gap(gapchar)
75 char _ch = char(toupper(ch));
106 stateCounter::size_type stateCounter::nStates(
void)
const 112 stateCounter::size_type nstates = (a > 0) ? 1 : 0;
113 nstates += (g > 0) ? 1 : 0;
114 nstates += (c > 0) ? 1 : 0;
115 nstates += (t > 0) ? 1 : 0;
116 nstates += (zero > 0) ? 1 : 0;
117 nstates += (one > 0) ? 1 : 0;
bool operator()(const std::pair< key, value > &l, const std::pair< key, value > &r) const
The namespace in which this library resides.
declaration of Sequence::stateCounter, a class to keep track of nucleotide counts either at a site in...