Sequence::invalidPolyChar Struct Reference

This functor can be used to determine if a range contains characters that the SNP analysis routines in this library cannot handle gracefully. More...

#include <Sequence/SeqAlphabets.hpp>

Inherits unary_function< char, bool >.

Public Member Functions
bool	operator() (const char &nucleotide) const

Detailed Description

This functor can be used to determine if a range contains characters that the SNP analysis routines in this library cannot handle gracefully.

Definition at line 83 of file SeqAlphabets.hpp.

Member Function Documentation

operator()()

bool Sequence::invalidPolyChar::operator()

(

const char &

nucleotide

)

const

Returns

true if c is not in the set {A,G,C,T,N,-,.,0,1}, false otherwise. The period (.) can be used as an "identical to the 1st seq in a file" character, so should be considered valid

Note

Case-insensitive

Definition at line 47 of file SeqAlphabets.cc.

---

The documentation for this struct was generated from the following files:

• SeqAlphabets.hpp
• SeqAlphabets.cc