9 int main(
int argc,
char **argv)
11 std::ifstream in(argv[1]);
Tests if a character is in the set A,G,C,T.
various useful rexex-based functions for dealing with data. Declares Sequence::basic_dna_alphabet,Sequence::full_dna_alphabet, Sequence::pep_alphabet, and the function Sequence::validSeq.
bool validSeq(Iter beg, Iter end, const char *_pattern=Sequence::basic_dna_alphabet, const bool icase=true)
const char * full_dna_alphabet
Declaration of Sequence::Fasta streams.