Miscellany

Files
file	Comparisons.hpp
	delcaration of routines for comparing DNA sequences This file declares a set of functions useful for comparing two bits of sequence data–sequences, nucleotides, etc.

Functions
std::string	Sequence::Translate (std::string::const_iterator beg, std::string::const_iterator end, Sequence::GeneticCodes genetic_code=GeneticCodes::UNIVERSAL, const char &gapchar='-')

Detailed Description

Function Documentation

Translate()

std::string Sequence::Translate	(	std::string::const_iterator	beg,
		std::string::const_iterator	end,
		Sequence::GeneticCodes	genetic_code = GeneticCodes::UNIVERSAL,
		const char &	gapchar = '-'
	)

Parameters

beg	a pointer to the beginning of the region to translate
end	a pointer to 1 past the end of the region to translate
genetic_code	must be a value from the enumeration list Sequence::GeneticCodes
gapchar	a character representing an alignment gap

Returns

a string representing the translation of the range

Exceptions

std::runtime_error

if genetic_code is invalid #include <Sequence/Translate.hpp>

Definition at line 223 of file Translate.cc.