GranthamWeights.hpp

Go to the documentation of this file.

/*

Copyright (C) 2003-2009 Kevin Thornton, krthornt[]@[]uci.edu

Remove the brackets to email me.

This file is part of libsequence.

libsequence is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

libsequence is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
long with libsequence.  If not, see <http://www.gnu.org/licenses/>.

*/

#ifndef __GRANTHAMWEIGHTS_H__
#define __GRANTHAMWEIGHTS_H__

#include <Sequence/SeqEnums.hpp>
#include <Sequence/WeightingSchemes.hpp>

namespace Sequence
  {
  class Grantham;
  struct GranthamWeights2 : public WeightingScheme2
    {
      weights2_t operator()(const std::string &codon1, const std::string &codon2,Sequence::GeneticCodes genetic_code) const;
    };

  struct GranthamWeights3 : public WeightingScheme3
    {
      weights3_t operator()(const std::string &codon1, const std::string &codon2,Sequence::GeneticCodes genetic_code) const;
    };
}
#endif