libsequence  1.9.5
Recombination.hpp File Reference

namespace Sequence::Recombination More...

#include <vector>
#include <limits>

Go to the source code of this file.

Classes

struct  Sequence::PairwiseLDstats
 Pairwise linkage disequilibrium (LD) stats

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Namespaces

 Sequence::Recombination
 Methods dealing with recombination.
 
 Sequence
 The namespace in which this library resides.
 

Functions

double Sequence::Recombination::HudsonsC (const Sequence::PolyTable *data, const bool &haveOutgroup, const unsigned &outgroup) __attribute__((deprecated))
 
std::vector< PairwiseLDstats > Sequence::Recombination::Disequilibrium (const Sequence::PolyTable *data, const bool &haveOutgroup=false, const unsigned &outgroup=0, const unsigned &mincount=1, const double max_distance=std::numeric_limits< double >::max()) __attribute__((deprecated))
 Calculate pairwise LD for a Sequence::PolyTable. More...
 
PairwiseLDstats Sequence::Recombination::PairwiseLD (const Sequence::PolyTable *data, unsigned i, unsigned j, const bool &haveOutgroup=false, const unsigned &outgroup=0, const unsigned &mincount=1, const double max_distance=std::numeric_limits< double >::max()) __attribute__((deprecated))
 

Detailed Description

namespace Sequence::Recombination

Definition in file Recombination.hpp.