Recombination.hpp File Reference

namespace Sequence::Recombination More...

#include <vector>
#include <limits>

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Classes
struct	Sequence::PairwiseLDstats
	Pairwise linkage disequilibrium (LD) stats . More...

Namespaces
	Sequence::Recombination
	Methods dealing with recombination.
	Sequence
	The namespace in which this library resides.

Functions
double	Sequence::Recombination::HudsonsC (const Sequence::PolyTable *data, const bool &haveOutgroup, const unsigned &outgroup) __attribute__((deprecated))
std::vector< PairwiseLDstats >	Sequence::Recombination::Disequilibrium (const Sequence::PolyTable *data, const bool &haveOutgroup=false, const unsigned &outgroup=0, const unsigned &mincount=1, const double max_distance=std::numeric_limits< double >::max()) __attribute__((deprecated))
	Calculate pairwise LD for a Sequence::PolyTable. More...
PairwiseLDstats	Sequence::Recombination::PairwiseLD (const Sequence::PolyTable *data, unsigned i, unsigned j, const bool &haveOutgroup=false, const unsigned &outgroup=0, const unsigned &mincount=1, const double max_distance=std::numeric_limits< double >::max()) __attribute__((deprecated))

Detailed Description

namespace Sequence::Recombination

Definition in file Recombination.hpp.