libsequence
1.9.5
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namespace Sequence::Recombination More...
#include <vector>
#include <limits>
Go to the source code of this file.
Classes | |
struct | Sequence::PairwiseLDstats |
Pairwise linkage disequilibrium (LD) stats . More... | |
Namespaces | |
Sequence::Recombination | |
Methods dealing with recombination. | |
Sequence | |
The namespace in which this library resides. | |
Functions | |
double | Sequence::Recombination::HudsonsC (const Sequence::PolyTable *data, const bool &haveOutgroup, const unsigned &outgroup) __attribute__((deprecated)) |
std::vector< PairwiseLDstats > | Sequence::Recombination::Disequilibrium (const Sequence::PolyTable *data, const bool &haveOutgroup=false, const unsigned &outgroup=0, const unsigned &mincount=1, const double max_distance=std::numeric_limits< double >::max()) __attribute__((deprecated)) |
Calculate pairwise LD for a Sequence::PolyTable. More... | |
PairwiseLDstats | Sequence::Recombination::PairwiseLD (const Sequence::PolyTable *data, unsigned i, unsigned j, const bool &haveOutgroup=false, const unsigned &outgroup=0, const unsigned &mincount=1, const double max_distance=std::numeric_limits< double >::max()) __attribute__((deprecated)) |
namespace Sequence::Recombination
Definition in file Recombination.hpp.