ThreeSubs.hpp

Go to the documentation of this file.

/*

  Copyright (C) 2003-2009 Kevin Thornton, krthornt[]@[]uci.edu

  Remove the brackets to email me.

  This file is part of libsequence.

  libsequence is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation, either version 3 of the License, or
  (at your option) any later version.

  libsequence is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  long with libsequence.  If not, see <http://www.gnu.org/licenses/>.

*/

#ifndef THREESUBS_H
#define THREESUBS_H

#include <Sequence/PathwayHelper.hpp>
#include <Sequence/WeightingSchemes.hpp>
#include <Sequence/SeqEnums.hpp>
#include <string>
#include <memory>
namespace Sequence
{
  class RedundancyCom95;
  class ThreeSubs
  {
  private:
    struct ThreeSubsImpl;
    std::unique_ptr<ThreeSubsImpl> impl;
  public:
    explicit ThreeSubs(void);
    void operator() (const RedundancyCom95 & sitesObj,
                     const std::string &codon1, const std::string &codon2,
                     const Sequence::WeightingScheme3 *weights3);
    ~ThreeSubs(void);
    double P0 (void) const;
    double P2S (void) const;
    double P2V (void) const;
    double P4 (void) const;
    double Q0 (void) const;
    double Q2S (void) const;
    double Q2V (void) const;
    double Q4 (void) const;
  };
}
#endif