libsequence  1.9.5
summstats Directory Reference

Files

file  algorithm.hpp [code]
 
file  allele_counts.hpp [code]
 Count alleles at variable sites.
 
file  classics.hpp [code]
 "Classic" summaries of variation data.
 
file  garud.hpp [code]
 H1, H12, and H2/H1 stats.
 
file  generic.hpp [code]
 Generic utilities for calculating summary statistics.
 
file  nsl.hpp [code]
 nSL and iHS
 
file  nvariablesites.hpp [code]
 Calculate total numbers of polymorphisms.
 
file  thetah.hpp [code]
 Fay and Wu's $\hat\theta_H$.
 
file  thetal.hpp [code]
 Zeng et al. $\hat\theta_L$.
 
file  thetapi.hpp [code]
 
file  thetaw.hpp [code]
 Watterson's theta.
 
file  util.hpp [code]
 Helper functions for implementing summary statistics.