allele_counts.hpp File Reference

Count alleles at variable sites. More...

#include <vector>
#include <utility>
#include <cstdint>
#include <Sequence/AlleleCountMatrix.hpp>

Go to the source code of this file.

Classes
struct	Sequence::AlleleCounts

Namespaces
	Sequence
	The namespace in which this library resides.

Functions
std::vector< AlleleCounts >	Sequence::allele_counts (const AlleleCountMatrix &m)
	Count number of alleles at each site. More...
std::vector< AlleleCounts >	Sequence::non_reference_allele_counts (const AlleleCountMatrix &m, const std::int8_t refstate)
	Count number of non-reference alleles at each site. More...
std::vector< AlleleCounts >	Sequence::non_reference_allele_counts (const AlleleCountMatrix &m, const std::vector< std::int8_t > &refstates)
	Count number of non-reference alleles at each site. More...

Detailed Description

Count alleles at variable sites.

Definition in file allele_counts.hpp.