Classes Related to Polymorphism tables

Classes
class	Sequence::PolyTable
	The base class for polymorphism tables. More...
class	Sequence::SimData
	Data from coalescent simulations. More...
class	Sequence::SimpleSNP
	SNP table data format. More...
class	Sequence::PolySites
	Polymorphism tables for sequence data. More...

Functions
polySiteVector	Sequence::make_polySiteVector (const Sequence::PolyTable &data) __attribute__((deprecated))
polySiteVector	Sequence::rotatePolyTable (const Sequence::PolyTable *data)

Detailed Description

Function Documentation

make_polySiteVector()

polySiteVector Sequence::make_polySiteVector

(

const Sequence::PolyTable &

data

)

Rotate a polymorphism table into a vector of pairs, where the pairs are of type std::pair<double, string>, representing the site position and the characters at that site

Parameters

data	a pointer to a Sequence::PolyTable

Definition at line 29 of file polySiteVector.cc.

rotatePolyTable()

polySiteVector Sequence::rotatePolyTable

(

const Sequence::PolyTable *

data

)

Rotate a polymorphism table into a vector of pairs, where the pairs are of type std::pair<double, string>, representing the site position and the characters at that site

Parameters

data	a pointer to a Sequence::PolyTable

Definition at line 29 of file PolyTableManip.cc.