Molecular Population Genetics

Modules
	Classes and functions related to simulating data under coalescent models
	Analysis of molecular population genetic data
	Summary statistics and other analysis of Sequence::VariantMatrixSee Tutorial/overview.
	Variant Matrix
	Representation and manipulation of variation data.
	Classes Related to Polymorphism tables

Classes
struct	Sequence::HKAdata
	Data from a single locus for an HKA test. More...
struct	Sequence::HKAresults
	results of calculations of the HKA test More...

Functions
HKAresults	Sequence::calcHKA (const std::vector< HKAdata > &data)

Detailed Description

Function Documentation

calcHKA()

HKAresults Sequence::calcHKA

(

const std::vector< HKAdata > &

data

)

Performs the calculations necessary for the HKA test.

Parameters

data	a vector of HKAdata objects

Returns

an object of type multiLocusHKAparams.

Note

The thetas vector in the return object contains theta values in the same order as the loci in data.

Definition at line 100 of file HKA.cc.